How to Calculate Rate of Diffusion Agar

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Agar Diffusion Rate Calculator

Calculate the rate of diffusion for biology experiments (e.g., agar cubes in HCl or NaOH) and determine Surface Area to Volume ratios.

Measure from the edge to the color change line.
Used to calculate SA:V ratio.
Please enter valid positive numbers for distance and time.

Calculation Results

Rate of Diffusion:
Surface Area (SA):
Volume (V):
SA:V Ratio:
Percentage Volume Diffused:

How to Calculate Rate of Diffusion in Agar

Understanding the rate of diffusion is a fundamental concept in biology, particularly when studying cell size limitations. This calculator helps analyze the results of standard laboratory experiments where agar blocks (often containing phenolphthalein) are submerged in solutions like hydrochloric acid (HCl) or sodium hydroxide (NaOH).

The Diffusion Rate Formula

To calculate the basic rate of diffusion, you simply divide the distance the substance has traveled into the agar by the time it took to travel that distance.

Rate of Diffusion = Distance Traveled (mm) / Time (minutes)

Example: If the acid turned the agar clear to a depth of 2mm after 10 minutes, the calculation would be:

  • Distance: 2 mm
  • Time: 10 min
  • Rate: 2 / 10 = 0.2 mm/min

Surface Area to Volume Ratio (SA:V)

In biology labs, this experiment is often used to demonstrate why cells are microscopic. The efficiency of diffusion depends heavily on the Surface Area to Volume ratio.

  • Surface Area (Cube): Height × Width × Number of Sides (6)
  • Volume (Cube): Height × Width × Depth

As a cell (or agar cube) grows larger, its volume increases much faster than its surface area. This results in a lower SA:V ratio, making diffusion less efficient at transporting nutrients to the center of the cell.

Calculating Percent Volume Diffused

To find out how much of the total cube was reached by the diffusion, we calculate the volume of the inner "undiffused" cube and subtract it from the total volume.

Formula:
% Diffused = ((Total Volume - Inner Volume) / Total Volume) × 100

Where the Inner Cube side length = Total Side – (2 × Distance Diffused).

Factors Affecting Diffusion Rate in Agar

  1. Concentration Gradient: A higher concentration difference between the solution and the agar increases the rate.
  2. Temperature: Higher temperatures increase the kinetic energy of particles, speeding up diffusion.
  3. Density of Agar: A higher percentage of agar creates a denser matrix, potentially slowing down particle movement.
  4. Molecular Weight: Heavier molecules diffuse more slowly than lighter ones.
function calculateDiffusion() { // Get input values var distance = document.getElementById('distTraveled').value; var time = document.getElementById('timeElapsed').value; var cubeSide = document.getElementById('cubeSide').value; // Elements for display var resultsDiv = document.getElementById('results'); var errorDiv = document.getElementById('errorMsg'); var resRate = document.getElementById('resRate'); var savSection = document.getElementById('savSection'); // Reset display resultsDiv.style.display = 'none'; errorDiv.style.display = 'none'; savSection.style.display = 'none'; // Validation for Rate if (distance === "" || time === "" || isNaN(distance) || isNaN(time) || time 0)."; return; } // Parse floats var d = parseFloat(distance); var t = parseFloat(time); // Calculate Rate var rate = d / t; resRate.innerHTML = rate.toFixed(3) + " mm/min"; // Calculate SA:V if cube side is provided if (cubeSide !== "" && !isNaN(cubeSide) && parseFloat(cubeSide) > 0) { var s = parseFloat(cubeSide); // Surface Area = 6 * s^2 var sa = 6 * s * s; // Volume = s^3 var vol = s * s * s; // Ratio var ratio = sa / vol; // Percent Diffused Logic // The diffusion happens from all sides, so we subtract 2 * distance from the side length to get the inner cube var innerSide = s – (2 * d); var percentDiffused = 0; if (innerSide <= 0) { // Fully diffused percentDiffused = 100; } else { var innerVol = innerSide * innerSide * innerSide; var diffusedVol = vol – innerVol; percentDiffused = (diffusedVol / vol) * 100; } // Update DOM document.getElementById('resSA').innerHTML = sa.toFixed(2) + " mm²"; document.getElementById('resVol').innerHTML = vol.toFixed(2) + " mm³"; document.getElementById('resRatio').innerHTML = ratio.toFixed(2) + ":1"; document.getElementById('resPercent').innerHTML = percentDiffused.toFixed(2) + "%"; savSection.style.display = 'block'; } resultsDiv.style.display = 'block'; }

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